reeb_graph.Reeb_Graph Member List

This is the complete list of members for reeb_graph.Reeb_Graph, including all inherited members.

__init__(self, inputfile=None, backbone=None, flow=None, radii=None, M=None, m=None, grid_size=50, t_step=50, PREV_DATA=(None, None, None, None), periodic=True, fat_radius=1, covering=np.array([-1, 1]), reeb_stride=1, swap_res_grid_and_balls=False, transform_points=None, relax_z_axis=None, verbose=False, MP=False, save_RAM=True, stride=1)	reeb_graph.Reeb_Graph
affine_transform(self, points, radii, V, v, M, m)	reeb_graph.Reeb_Graph
atoms_kinds	reeb_graph.Reeb_Graph
atoms_kinds_aux	reeb_graph.Reeb_Graph
axes	reeb_graph.Reeb_Graph
axis	reeb_graph.Reeb_Graph
backbone	reeb_graph.Reeb_Graph
balls_centres	reeb_graph.Reeb_Graph
balls_radii	reeb_graph.Reeb_Graph
build_graph(self, E, weights, fun, emb)	reeb_graph.Reeb_Graph
compute_bottlenecks(self, D_=None, plot=False, col_thresh=-0.001, plot_thresh=400, include_deadlocks=False)	reeb_graph.Reeb_Graph
compute_max_flow(self, D_=None)	reeb_graph.Reeb_Graph
compute_sorrounding_structure(self, path, boundaries=False)	reeb_graph.Reeb_Graph
compute_tunnels(self, n=10, D_=None, independent=False, plot=False)	reeb_graph.Reeb_Graph
covering	reeb_graph.Reeb_Graph
D_flow	reeb_graph.Reeb_Graph
D_reeb_w	reeb_graph.Reeb_Graph
d_x	reeb_graph.Reeb_Graph
d_y	reeb_graph.Reeb_Graph
d_z	reeb_graph.Reeb_Graph
delta	reeb_graph.Reeb_Graph
dim	reeb_graph.Reeb_Graph
distances_to_balls	reeb_graph.Reeb_Graph
distances_to_balls_aux	reeb_graph.Reeb_Graph
DIV	reeb_graph.Reeb_Graph
E	reeb_graph.Reeb_Graph
fat_radius	reeb_graph.Reeb_Graph
flow	reeb_graph.Reeb_Graph
G	reeb_graph.Reeb_Graph
graph	reeb_graph.Reeb_Graph
grid	reeb_graph.Reeb_Graph
grid_size	reeb_graph.Reeb_Graph
idxs	reeb_graph.Reeb_Graph
inputfile	reeb_graph.Reeb_Graph
M	reeb_graph.Reeb_Graph
m	reeb_graph.Reeb_Graph
m_x	reeb_graph.Reeb_Graph
m_y	reeb_graph.Reeb_Graph
m_z	reeb_graph.Reeb_Graph
make_reeb_graph(self, axis=-1, old=False, plot=False)	reeb_graph.Reeb_Graph
make_tunnel_matrix(self)	reeb_graph.Reeb_Graph
max_flow	reeb_graph.Reeb_Graph
measure_path_comp	reeb_graph.Reeb_Graph
MIN	reeb_graph.Reeb_Graph
MP	reeb_graph.Reeb_Graph
N	reeb_graph.Reeb_Graph
n	reeb_graph.Reeb_Graph
network_plot_3D(self, fun, D=None)	reeb_graph.Reeb_Graph
norm	reeb_graph.Reeb_Graph
nx	reeb_graph.Reeb_Graph
ny	reeb_graph.Reeb_Graph
nz	reeb_graph.Reeb_Graph
PATHS	reeb_graph.Reeb_Graph
periodic	reeb_graph.Reeb_Graph
plot_path_connected_comp(self, comps, three_d=False, boundaries=False, plot_reeb=False, plot_sorrounding=True)	reeb_graph.Reeb_Graph
plot_reeb(self)	reeb_graph.Reeb_Graph
plot_res_grid(self, three_d=False, heights_=None, axis=-1)	reeb_graph.Reeb_Graph
plot_tunnel(self, path, D)	reeb_graph.Reeb_Graph
produce_res_grid(self, balls_centres=None, balls_radii=None, M=None, m=None)	reeb_graph.Reeb_Graph
r_graph	reeb_graph.Reeb_Graph
radii	reeb_graph.Reeb_Graph
reeb_connected	reeb_graph.Reeb_Graph
REEB_GRAPH	reeb_graph.Reeb_Graph
reeb_graph(self, grid, axis=-1, D_=None)	reeb_graph.Reeb_Graph
reeb_graph_old(self, grid, axis=-1, D_=None)	reeb_graph.Reeb_Graph
reeb_stride	reeb_graph.Reeb_Graph
relax_z_axis	reeb_graph.Reeb_Graph
res_grid	reeb_graph.Reeb_Graph
save_RAM	reeb_graph.Reeb_Graph
setup_grid(self, balls_centres=None, balls_radii=None, M=None, m=None)	reeb_graph.Reeb_Graph
simply_connected_top_bottom	reeb_graph.Reeb_Graph
stride	reeb_graph.Reeb_Graph
swap_res_grid_and_balls	reeb_graph.Reeb_Graph
t_step	reeb_graph.Reeb_Graph
transform_backbone(self, balls_centres=None, balls_radii=None, M=None, m=None)	reeb_graph.Reeb_Graph
transform_points	reeb_graph.Reeb_Graph
unit_2d	reeb_graph.Reeb_Graph
unit_3d	reeb_graph.Reeb_Graph
verbose	reeb_graph.Reeb_Graph
VOL	reeb_graph.Reeb_Graph
x	reeb_graph.Reeb_Graph
y	reeb_graph.Reeb_Graph
z	reeb_graph.Reeb_Graph
z_0	reeb_graph.Reeb_Graph
z_1	reeb_graph.Reeb_Graph
z_axis_boundaries	reeb_graph.Reeb_Graph